Main Protagonists

Rise of the Alliance

 * Nathan
 * Mink
 * Aiden
 * Jack
 * Snapdragon
 * Leroy Koopa

Junior Alliance

 * Jack
 * Luke
 * Pugeleto
 * William
 * Wilke
 * Desmin
 * Jayden

Quicc

 * Aiden
 * Trunks
 * Desmin

Spirit of Evil

 * Nathan (Electro Pikachu)
 * Matthew/Leroy Koopa
 * Christian/Shade
 * Yaneli
 * Mink
 * Snapdragon

Alliance Killer

 * Zephyr (AU Nathan)
 * AU Mink (Fused with Zephyr)
 * AU Jack (Deceased)
 * AU Aiden (Deceased)
 * AU Leroy (Deceased)

Ghost Protocol

 * Nathan (Electro Pikachu)
 * Black Goku Jr.
 * Desmin
 * Gojira
 * Aiden
 * ShapeShifter

Guardian: Resonant Hero

 * ShapeShifter
 * Gwanian

Allied Forces: WAR

 * Nathan (Electro Pikachu)
 * Aiden (Awesomeshot)
 * Black Goku Jr.
 * Desmin
 * Gojira
 * Christian/Shade

Junior Alliance: Upgraded

 * Jack
 * Desmin
 * Pugaleto
 * William
 * Luke
 * Wilke
 * Jayden
 * Paeton (Electric Spider)

Melee: Hidden Potential

 * Melee
 * Yusuke
 * N